SMART — Field Reference

SMART (Somatic Mutation Annotation and Reporting Tool) integrates annotations from multiple sources into a single output table. This page describes every field produced by the pipeline — what it contains, where it comes from, and which tool or database version generated it.

📈 View example output → Browse all three output files from the Verification 1 test run (22 variants, 1 sample) as interactive, searchable tables with colour-coded OncoKB levels.

Field reference

Source: All sources VCF VEP OncoKB ClinVar CIViC Cancer Hotspots SpliceAI REVEL gnomAD Exomes gnomAD Genomes Manta

Field	Description	Source	Version
Tumor_Sample_Barcode	Tumour sample identifier	VCF	vcf_v2.4
Chromosome	Chromosome name	VCF	vcf_v2.4
CHROM	Chromosome name	VEP	114.2
Start_Position	Variant start position	VCF	vcf_v2.4
End_Position	Variant end position	Computed	internal_v1
Reference_Allele	Reference allele	VCF	vcf_v2.4
POS	Genomic position of the variant in the VCF record	VCF	vcf_v2.4
ID	Variant identifier from the VCF record	VCF	vcf_v2.4
REF	Reference allele from the VCF record	VCF	vcf_v2.4
ALT	Alternate allele from the VCF record	VCF	vcf_v2.4
QUAL	Variant quality score from the VCF record	VCF	vcf_v2.4
FILTER	Filter status from the VCF record	VCF	vcf_v2.4
Tumor_Seq_Allele1	Tumour allele 1	VCF	vcf_v2.4
Tumor_Seq_Allele2	Tumour allele 2	VCF	vcf_v2.4
VAF	Frequency of existing variant in 1000 Genomes https://www.ensembl.org/info/docs/tools/vep/vep_formats.html	VCF	vcf_v2.4
HGVSp_Short	Short HGVS protein notation	VEP	114.2
HGVSp	The HGVS protein sequence name https://www.ensembl.org/info/docs/tools/vep/vep_formats.html	VEP	114.2
NM_Transcript	RefSeq NM transcript identifier	VEP	114.2
Allele	Alternate allele used in annotation	VEP	114.2
Consequence	Predicted variant consequence	VEP	114.2
IMPACT	Predicted functional impact	VEP	114.2
SYMBOL	Gene symbol	VEP	114.2
Gene	Ensembl gene ID	VEP	114.2
Feature_type	Feature type (Transcript, Regulatory, etc.)	VEP	114.2
Feature	Ensembl feature identifier	VEP	114.2
BIOTYPE	Transcript biotype	VEP	114.2
EXON	Exon number within transcript	VEP	114.2
INTRON	Intron number within transcript	VEP	114.2
HGVSc	HGVS coding DNA notation	VEP	114.2
cDNA_position	Position within cDNA	VEP	114.2
CDS_position	Position within CDS	VEP	114.2
Protein_position	Position within protein sequence	VEP	114.2
Amino_acids	Reference and alternate amino acids	VEP	114.2
Codons	Reference and alternate codons	VEP	114.2
Existing_variation	Known variant identifiers rs1234567 and or COSV1234567	VEP	114.2
DISTANCE	Shortest distance from variant to transcript. Note DISTANCE of 0 is possible for insertions happening just before or after a transcript because variant coordinates are considered to be the flanking bases where insertion happens.	VEP	114.2
STRAND	Strand of the feature (1/-1)	VEP	114.2
FLAGS	Transcript quality flags. Transcript annotation flags indicating potential issues with transcript completeness or coding sequence annotation (e.g. cds_start_NF, cds_end_NF) 3https://www.ensembl.org/info/genome/genebuild/transcript_quality_tags.html	VEP	114.2
VARIANT_CLASS	Sequence Ontology variant class https://www.ensembl.org/info/genome/variation/prediction/classification.html#classes	VEP	114.2
SYMBOL_SOURCE	Source of gene symbol	VEP	114.2
HGNC_ID	HGNC gene identifier	VEP	114.2
CANONICAL	Indicates canonical transcript	VEP	114.2
MANE	Matched Annotation from NCBI and EMBL-EBI flag. https://www.ensembl.org/info/genome/genebuild/mane.html	VEP	114.2
MANE_SELECT	MANE Select transcript. https://www.ensembl.org/info/genome/genebuild/mane.html	VEP	114.2
MANE_PLUS_CLINICAL	MANE Plus Clinical transcript. https://www.ensembl.org/info/genome/genebuild/mane.html	VEP	114.2
TSL	Transcript support level	VEP	114.2
APPRIS	APPRIS annotation indicating whether the transcript is a principal or alternative isoform https://appris.bioinfo.cnio.es/#/	VEP	114.2
CCDS	CCDS transcript identifier	VEP	114.2
ENSP	Ensembl protein identifier	VEP	114.2
SWISSPROT	UniProt Swiss-Prot identifier	VEP	114.2
TREMBL	UniProt TrEMBL identifier	VEP	114.2
UNIPARC	UniParc identifier	VEP	114.2
UNIPROT_ISOFORM	UniProt isoform identifier	VEP	114.2
SOURCE	Annotation source	VEP	114.2
GENE_PHENO	Gene phenotype association	VEP	114.2
SIFT	SIFT prediction score	VEP	114.2
PolyPhen	PolyPhen prediction score	VEP	114.2
DOMAINS	Protein domains overlapping variant	VEP	114.2
miRNA	microRNA annotation	VEP	114.2
HGVS_OFFSET	Offset applied to HGVS notation	VEP	114.2
MOTIF_POS	Position of the variant within the regulatory motif	VEP	114.2
HIGH_INF_POS	Indicates whether the variant falls at a highly informative position in the motif	VEP	114.2
MOTIF_SCORE_CHANGE	Change in motif binding score caused by the variant	VEP	114.2
MAX_AF	Maximum allele frequency observed across all population datasets	VEP	114.2
MAX_AF_POPS	Population in which the maximum allele frequency was observed	VEP	114.2
TRANSCRIPTION_FACTORS	Transcription factors associated with the regulatory motif	VEP	114.2
MOTIF_NAME	Regulatory motif affected	VEP	114.2
OriginalContig	Original contig reported by Manta	VCF_Manta	manta_vcf
OriginalStart	Original start coordinate reported by Manta	VCF_Manta	manta_vcf
SpliceAI_cutoff	Decision threshold applied to SpliceAI delta scores to classify variants as likely splice-altering. Variants with a delta score equal to or greater than the specified cutoff (commonly 0.2 or 0.5 depending on pipeline configuration) are considered to have a predicted impact on splicing. This threshold is defined by the analysis pipeline rather than by SpliceAI itself.	SpliceAI	1.3
SpliceAI_pred_DS_AG	SpliceAI delta score predicting the probability that the variant creates a new splice acceptor site (acceptor gain). The score ranges from 0 to 1, where higher values indicate a higher likelihood of splice alteration. Values ≥0.2 are often considered potentially significant, and ≥0.5 indicate strong predicted splice impact.	SpliceAI	1.3
SpliceAI_pred_DS_AL	SpliceAI delta score predicting the probability that the variant disrupts an existing splice acceptor site (acceptor loss). The score ranges from 0 to 1, with higher values indicating stronger predicted disruption of the native acceptor site.	SpliceAI	1.3
SpliceAI_pred_DS_DG	SpliceAI delta score predicting the probability that the variant creates a new splice donor site (donor gain). The score ranges from 0 to 1, representing the predicted probability of a novel donor splice site being introduced by the variant.	SpliceAI	1.3
SpliceAI_pred_DS_DL	SpliceAI delta score predicting the probability that the variant disrupts an existing splice donor site (donor loss). Scores range from 0 to 1, where higher values indicate a greater predicted loss of the canonical donor splice site.	SpliceAI	1.3
SpliceAI_pred_DP_AG	Predicted distance in base pairs between the variant position and the newly created splice acceptor site (acceptor gain). Positive or negative values indicate the position of the predicted splice site relative to the variant within the transcript sequence.	SpliceAI	1.3
SpliceAI_pred_DP_AL	Predicted distance in base pairs between the variant position and the disrupted splice acceptor site (acceptor loss). This value indicates where the affected splice acceptor site is located relative to the variant position.	SpliceAI	1.3
SpliceAI_pred_DP_DG	Predicted distance in base pairs between the variant position and the newly created splice donor site (donor gain). The value indicates the relative location of the predicted donor splice site with respect to the variant.	SpliceAI	1.3
SpliceAI_pred_DP_DL	Predicted distance in base pairs between the variant position and the disrupted splice donor site (donor loss). Indicates the relative location of the canonical donor splice site predicted to be affected by the variant.	SpliceAI	1.3
SpliceAI_pred_SYMBOL	Gene symbol associated with the SpliceAI prediction. This represents the gene for which the splice impact prediction was calculated based on the transcript model used during annotation.	SpliceAI	1.3
REVEL	Rare Exome Variant Ensemble Learner score predicting pathogenicity of missense variants. https://sites.google.com/site/revelgenomics/	REVEL	1.3
LOEUF	Loss-of-function observed/expected upper bound fraction indicating gene intolerance	Karczewski et al., Nature 2020 The mutational constraint spectrum quantified from variation in 141,456 humans	gnomAD_v4.0
AF	Global allele frequency from population datasets	VEP	114.2
AFR_AF	Allele frequency in African populations (1000G/gnomAD)	gnomAD/1000G	VEP_114.2
AMR_AF	Allele frequency in Admixed American populations	gnomAD/1000G	VEP_114.2
EAS_AF	Allele frequency in East Asian populations	gnomAD/1000G	VEP_114.2
EUR_AF	Allele frequency in European populations	gnomAD/1000G	VEP_114.2
SAS_AF	Allele frequency in South Asian populations	gnomAD/1000G	VEP_114.2
gnomADe_AF	Allele frequency in gnomAD exomes	gnomAD Exomes	gnomAD_v4.0
gnomADe_AFR_AF	Allele frequency in African/African-American populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_AMR_AF	Allele frequency in Admixed American populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_ASJ_AF	Allele frequency in Ashkenazi Jewish population (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_EAS_AF	Allele frequency in East Asian populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_FIN_AF	Allele frequency in Finnish populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_MID_AF	Allele frequency in Middle Eastern populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_NFE_AF	Allele frequency in Non-Finnish European populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_REMAINING_AF	Allele frequency in remaining populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADe_SAS_AF	Allele frequency in South Asian populations (gnomAD exomes)	gnomAD Exomes	gnomAD_v4.0
gnomADg_AF	Allele frequency in gnomAD genomes	gnomAD Genomes	gnomAD_v4.0
gnomADg_AFR_AF	Allele frequency in African populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_AMI_AF	Allele frequency in Amish population (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_AMR_AF	Allele frequency in Admixed American populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_ASJ_AF	Allele frequency in Ashkenazi Jewish populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_EAS_AF	Allele frequency in East Asian populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_FIN_AF	Allele frequency in Finnish populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_MID_AF	Allele frequency in Middle Eastern populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_NFE_AF	Allele frequency in Non-Finnish European populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_REMAINING_AF	Allele frequency in remaining populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
gnomADg_SAS_AF	Allele frequency in South Asian populations (gnomAD genomes)	gnomAD Genomes	gnomAD_v4.0
CLIN_SIG	Clinical significance assigned in ClinVar	ClinVar	ClinVar_2024-12
SOMATIC	Indicates whether the variant has a somatic clinical interpretation	ClinVar	ClinVar_2024-12
PHENO	Phenotype or disease associated with the variant	ClinVar	ClinVar_2024-12
PUBMED	PubMed identifiers supporting the ClinVar submission	ClinVar	ClinVar_2024-12
ClinVar	ClinVar variant identifier	ClinVar	ClinVar_2024-12
ClinVar_AF_ESP	allele frequencies from GO-ESP	ClinVar	ClinVar_2024-12
ClinVar_AF_EXAC	allele frequencies from ExAC	ClinVar	ClinVar_2024-12
ClinVar_AF_TGP	allele frequencies from TGP	ClinVar	ClinVar_2024-12
ClinVar_ALLELEID	the ClinVar Allele ID	ClinVar	ClinVar_2024-12
ClinVar_CLNDN	ClinVar's preferred disease name for the concept specified by disease identifiers in CLNDISDB	ClinVar	ClinVar_2024-12
ClinVar_CLNDNINCL	For included Variant : ClinVar's preferred disease name for the concept specified by disease identifiers in CLNDISDB	ClinVar	ClinVar_2024-12
ClinVar_CLNDISDB	Tag-value pairs of disease database name and identifier submitted for germline classifications, e.g. OMIM:NNNNNN	ClinVar	ClinVar_2024-12
ClinVar_CLNDISDBINCL	For included Variant: Tag-value pairs of disease database name and identifier for germline classifications, e.g. OMIM:NNNNNN	ClinVar	ClinVar_2024-12
ClinVar_CLNHGVS	Top-level (primary assembly, alt, or patch) HGVS expression.	ClinVar	ClinVar_2024-12
ClinVar_CLNREVSTAT	ClinVar review status of germline classification for the Variation ID	ClinVar	ClinVar_2024-12
ClinVar_CLNSIG	Aggregate germline classification for this single variant; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_CLNSIGCONF	Conflicting germline classification for this single variant; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_CLNSIGINCL	Germline classification for a haplotype or genotype that includes this variant. Reported as pairs of VariationID:classification; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_CLNSIGSCV	SCV accession numbers for the submissions that contribute to the aggregate germline classification in ClinVar; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_CLNVC	Variant type	ClinVar	ClinVar_2024-12
ClinVar_CLNVCSO	Sequence Ontology id for variant type	ClinVar	ClinVar_2024-12
ClinVar_CLNVI	the variant's clinical sources reported as tag-value pairs of database and variant identifier	ClinVar	ClinVar_2024-12
ClinVar_DBVARID	nsv accessions from dbVar for the variant	ClinVar	ClinVar_2024-12
ClinVar_GENEINFO	Gene(s) for the variant reported as gene symbol:gene id. The gene symbol and id are delimited by a colon (:) and each pair is delimited by a vertical bar (\|)	ClinVar	ClinVar_2024-12
ClinVar_MC	comma separated list of molecular consequence in the form of Sequence Ontology ID\|molecular_consequence	ClinVar	ClinVar_2024-12
ClinVar_ONCDN	ClinVar's preferred disease name for the concept specified by disease identifiers in ONCDISDB	ClinVar	ClinVar_2024-12
ClinVar_ONCDNINCL	For included variant: ClinVar's preferred disease name for the concept specified by disease identifiers in ONCDISDBINCL	ClinVar	ClinVar_2024-12
ClinVar_ONCDISDB	Tag-value pairs of disease database name and identifier submitted for oncogenicity classifications, e.g. MedGen:NNNNNN	ClinVar	ClinVar_2024-12
ClinVar_ONCDISDBINCL	For included variant: Tag-value pairs of disease database name and identifier for oncogenicity classifications, e.g. OMIM:NNNNNN	ClinVar	ClinVar_2024-12
ClinVar_ONC	Aggregate oncogenicity classification for this single variant; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_ONCINCL	Oncogenicity classification for a haplotype or genotype that includes this variant. Reported as pairs of VariationID:classification; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_ONCREVSTAT	ClinVar review status of oncogenicity classification for the Variation ID	ClinVar	ClinVar_2024-12
ClinVar_ONCSCV	SCV accession numbers for the submissions that contribute to the aggregate oncogenicity classification in ClinVar; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_ONCCONF	Conflicting oncogenicity classification for this single variant; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_ORIGIN	Allele origin. One or more of the following values may be added: 0 - unknown; 1 - germline; 2 - somatic; 4 - inherited; 8 - paternal; 16 - maternal; 32 - de-novo; 64 - biparental; 128 - uniparental; 256 - not-tested; 512 - tested-inconclusive; 1073741824 - other	ClinVar	ClinVar_2024-12
ClinVar_RS	dbSNP ID (i.e. rs number)	ClinVar	ClinVar_2024-12
ClinVar_SCIDN	ClinVar's preferred disease name for the concept specified by disease identifiers in SCIDISDB	ClinVar	ClinVar_2024-12
ClinVar_SCIDNINCL	For included variant: ClinVar's preferred disease name for the concept specified by disease identifiers in SCIDISDBINCL	ClinVar	ClinVar_2024-12
ClinVar_SCIDISDB	Tag-value pairs of disease database name and identifier submitted for somatic clinial impact classifications, e.g. MedGen:NNNNNN	ClinVar	ClinVar_2024-12
ClinVar_SCIDISDBINCL	For included variant: Tag-value pairs of disease database name and identifier for somatic clinical impact classifications, e.g. OMIM:NNNNNN	ClinVar	ClinVar_2024-12
ClinVar_SCIREVSTAT	ClinVar review status of somatic clinical impact for the Variation ID	ClinVar	ClinVar_2024-12
ClinVar_SCI	Aggregate somatic clinical impact for this single variant; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_SCIINCL	Somatic clinical impact classification for a haplotype or genotype that includes this variant. Reported as pairs of VariationID:classification; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
ClinVar_SCISCV	SCV accession numbers for the submissions that contribute to the aggregate somatic clinical impact in ClinVar; multiple values are separated by a vertical bar	ClinVar	ClinVar_2024-12
CIViC	CIViC variant identifier linking the variant to CIViC knowledgebase entries	CIViC	CIViC_v3.6
CIViC_GN	HGNC Gene Symbol	CIViC	CIViC_v3.6
CIViC_VT	CIViC Variant Name	CIViC	CIViC_v3.6
CIViC_CSQ_Allele	Allele reported in CIViC annotation	CIViC	CIViC_v3.6
CIViC_CSQ_Consequence	Variant consequence annotation associated with the CIViC record	CIViC	CIViC_v3.6
CIViC_CSQ_SYMBOL	Gene symbol associated with the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_Entrez Gene ID	Entrez Gene identifier for the gene associated with the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_Feature_type	Feature type associated with the variant annotation (e.g. transcript)	CIViC	CIViC_v3.6
CIViC_CSQ_Feature	Transcript or genomic feature identifier used for the CIViC annotation	CIViC	CIViC_v3.6
CIViC_CSQ_HGVSc	HGVS coding DNA notation associated with the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_HGVSp	HGVS protein notation associated with the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Variant Name	CIViC variant name	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Variant ID	Unique CIViC identifier for the variant	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Variant Aliases	Alternative names used for the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Variant URL	URL linking to the CIViC variant page	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Molecular Profile Name	Name of the CIViC molecular profile associated with the variant	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Molecular Profile ID	Unique identifier of the CIViC molecular profile	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Molecular Profile Aliases	Molecular Profile Aliases	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Molecular Profile URL	URL linking to the CIViC molecular profile page	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC HGVS	HGVS notation describing the variant used in CIViC	CIViC	CIViC_v3.6
CIViC_CSQ_Allele Registry ID	ClinGen Allele Registry identifier associated with the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_ClinVar IDs	ClinVar identifiers associated with the CIViC variant	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Molecular Profile Score	Score assigned by CIViC representing evidence strength for the molecular profile	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Type	Type of CIViC entity represented (e.g. evidence, assertion)	CIViC	CIViC_v3.6
CIViC_Entity_ID	Unique CIViC identifier for the entity record	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Disease	Unique CIViC identifier for Entity Disease	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity URL	URL linking to the CIViC entity page	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Source	Source publication or database supporting the CIViC entity	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Variant Origin	Variant origin classification (e.g. somatic, germline)	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Status	Curation status of the CIViC entity	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Significance	Clinical significance of the variant according to CIViC evidence	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Direction	Direction of clinical evidence (e.g. supports or does not support)	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity ID	Disease context associated with the CIViC entity	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Therapies	Therapies associated with the CIViC entity	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Entity Therapy Interaction Type	Interaction type between therapies in CIViC evidence (e.g. combination)	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Evidence Phenotypes	Phenotypes associated with CIViC evidence records	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Evidence Level	CIViC evidence level classification	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Evidence Rating	CIViC evidence rating score	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Assertion ACMG Codes	ACMG codes associated with CIViC assertions	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Assertion AMP Category	AMP classification category assigned by CIViC	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Assertion NCCN Guideline	NCCN guideline references associated with the CIViC assertion	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Assertion Regulatory Approval	Regulatory approval status associated with the CIViC assertion	CIViC	CIViC_v3.6
CIViC_CSQ_CIViC Assertion FDA Companion Test	FDA companion diagnostic test associated with the CIViC assertion	CIViC	CIViC_v3.6
CIViC_CSQ	Allele\|Consequence\|SYMBOL\|Entrez Gene ID\|Feature_type\|Feature\|HGVSc\|HGVSp\|CIViC Variant Name\|CIViC Variant ID\|CIViC Variant Aliases\|CIViC Variant URL\|CIViC Molecular Profile Name\|CIViC Molecular Profile ID\|CIViC Molecular Profile Aliases\|CIViC Molecular Profile URL\|CIViC HGVS\|Allele Registry ID\|ClinVar IDs\|CIViC Molecular Profile Score\|CIViC Entity Type\|CIViC Entity ID\|CIViC Entity URL\|CIViC Entity Source\|CIViC Entity Variant Origin\|CIViC Entity Status\|CIViC Entity Significance\|CIViC Entity Direction\|CIViC Entity Disease\|CIViC Entity Therapies\|CIViC Entity Therapy Interaction Type\|CIViC Evidence Phenotypes\|CIViC Evidence Level\|CIViC Evidence Rating\|CIViC Assertion ACMG Codes\|CIViC Assertion AMP Category\|CIViC Assertion NCCN Guideline\|CIViC Assertion Regulatory Approval\|CIViC Assertion FDA Companion Test	CIViC	CIViC_v3.6
CancerHotspots	Indicates whether the variant overlaps a curated cancer hotspot	Cancer Hotspots	changv2
CancerHotspots_HOTSPOT	Protein-level hotspot annotation from Cancer Hotspots database	Cancer Hotspots	changv2
CancerHotspots_HOTSPOT_GENE	Gene associated with the Cancer Hotspots protein-level hotspot	Cancer Hotspots	changv2
CancerHotspots_HOTSPOT_HGVSp	HGVS protein change defining the Cancer Hotspots protein hotspot	Cancer Hotspots	changv2
CancerHotspots_HOTSPOT3D	Indicates whether the variant lies within a 3D structural hotspot cluster	Cancer Hotspots	changv2
CancerHotspots_HOTSPOT3D_GENE	Gene associated with the 3D structural hotspot cluster	Cancer Hotspots	changv2
CancerHotspots_HOTSPOT3D_HGVSp	HGVS protein change associated with the 3D hotspot cluster	Cancer Hotspots	changv2
CancerHotspots_HOTSPOTNC	Non-coding hotspot annotation from Cancer Hotspots dataset	Cancer Hotspots	changv2
CancerHotspots_HOTSPOTNC_GENE	Gene associated with the non-coding hotspot	Cancer Hotspots	changv2
CancerHotspots_HOTSPOTNC_HGVSc	HGVS coding notation associated with the non-coding hotspot	Cancer Hotspots	changv2
hotspot	Known somatic site, used to increase confidence in call	Cancer Hotspots	changv2
NCBI_Build	Genome build used in the OncoKB annotation	OncoKB	Refer to the ONCOKB_DATA_VERSION column
Hugo_Symbol	HGNC gene symbol used in OncoKB annotation. Only added when annotating genomic change or HGVSg. When annotating genomic change, we obtained gene hugo symbol from GenomeNexus. This can be cross-referenced with your own gene name.	OncoKB	Refer to the ONCOKB_DATA_VERSION column
ONCOKB_genefx	Functional classification of the gene in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column
ONCOKB_variant	Variant name recognized by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column
ONCOKB_allelef	Allele frequency or allele annotation used by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column
ONCOKB_oncog	Oncogenic classification assigned by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column
ONCOKB_highes	Highest level of evidence associated with the variant	OncoKB	Refer to the ONCOKB_DATA_VERSION column
ONCOKB_others	Other significant levels of evidence reported by OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_hotspot	Indicates whether the variant is considered a hotspot in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_DIAGNOSTIC_IMPLICATIONS	Detailed diagnostic implications reported by OncoKB for the queried variant	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_diagnosticImplications	Detailed diagnostic implications reported by OncoKB for the queried variant	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_ALLELE_EXIST	Indicates whether the queried allele exists in the OncoKB knowledgebase. TRUE or FALSE	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_QUERY_ALTERATION	Variant alteration string submitted in the OncoKB query	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_QUERY_ENTREZ_GENE_ID	Entrez gene identifier used in the OncoKB query	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_QUERY_HUGO_SYMBOL	HGNC gene symbol used in the OncoKB query.	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_QUERY_REF_GENOME	Reference genome build used for the OncoKB query	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_QUERY_TUMOR_TYPE	Tumor type used in the OncoKB query context	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_exon	Exon associated with the OncoKB variant annotation	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_geneS	Gene summary provided by OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_variantf	Functional description of the variant from OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_tumor1	Tumor type associated with the OncoKB evidence	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_progno	Prognostic implications described in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_diagno	Diagnostic implications described in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_treatm	Treatment implications described in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_dataVe	Version of the OncoKB dataset used for annotation	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_lastUp	Date of the last update in the OncoKB dataset	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_PROGNOSTIC_IMPLICATIONS	This need to be updated. I cant find documentation online.	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_variantSummary	This need to be updated. I cant find documentation online.	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_VUS.1	This need to be updated. I cant find documentation online.	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_highestSensitiveLevel	Highest therapeutic sensitivity level defined by OncoKB https://www.oncokb.org/therapeutic-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_highestResistanceLevel	Highest therapeutic resistance level defined by OncoKB https://www.oncokb.org/therapeutic-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_highestDiagnosticImplicationLevel	Highest diagnostic implication level defined by OncoKB https://www.oncokb.org/diagnostic-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_highestPrognosticImplicationLevel	Highest prognostic implication level defined by OncoKB https://www.oncokb.org/prognostic-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_highestFdaLevel	Highest FDA-recognized level of evidence for the variant https://www.oncokb.org/fda-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_prognosticSummary	Text summary of prognostic implications from OncoKB https://www.oncokb.org/prognostic-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_diagnosticSummary	Text summary of diagnostic implications from OncoKB https://www.oncokb.org/diagnostic-levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_geneExist	Indicates whether the gene exists in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_variantExist	Indicates whether the variant exists in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_alleleExist	Indicates whether the allele exists in OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_oncogenic	Oncogenic classification according to OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_otherSignificantSensitiveLevels	Other significant therapeutic sensitivity levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_otherSignificantResistanceLevels	Other significant therapeutic resistance levels	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_VUS	Indicates whether the variant is classified as a Variant of Uncertain Significance	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_geneSummary	Gene-level summary provided by OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_tumorTypeSummary	Tumor-type specific summary provided by OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_prognosticImplications	Detailed prognostic implications described by OncoKB	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_dataVersion	Version of the OncoKB dataset used for annotation	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
ONCOKB_lastUpdate	Date of the most recent update to the OncoKB record	OncoKB	Version-Refer to the ONCOKB_DATA_VERSION column
BND_DEPTH	Read depth supporting the breakend reported by Manta	Manta	Manta_v1.6
CIEND	Confidence interval around the END coordinate	Manta	Manta_v1.6
CIGAR	Alignment CIGAR string describing the structural variant event	Manta	Manta_v1.6
CIPOS	Confidence interval around the POS coordinate	Manta	Manta_v1.6
DP	Approximate read depth at the variant position	VCF Standard	VCF_v4.2
DUPSVLEN	Length of the duplication structural variant	Manta	Manta_v1.6
END	End position of the structural variant	Manta	Manta_v1.6
FractionInformativeReads	Fraction of reads informative for the structural variant	Manta	Manta_v1.6
HOMLEN	Length of homologous sequence at the breakpoint	Manta	Manta_v1.6
HOMSEQ	Homologous sequence observed at the breakpoint	Manta	Manta_v1.6
IMPRECISE	Flag indicating that the structural variant breakpoints are imprecisely determined	Manta	Manta_v1.6
LEFT_SVINSSEQ	Left inserted sequence at the structural variant breakpoint	Manta	Manta_v1.6
MATEID	Identifier of the mate breakend record	Manta	Manta_v1.6
MATE_BND_DEPTH	Read depth supporting the mate breakend	Manta	Manta_v1.6
MQ	Root mean square mapping quality of reads covering the variant	VCF Standard	VCF_v4.2
RIGHT_SVINSSEQ	Right inserted sequence at the structural variant breakpoint	Manta	Manta_v1.6
ReverseComplementedAlleles	Indicates whether alleles were reverse complemented during representation	Manta	Manta_v1.6
SVLEN	Length of the structural variant event	Manta	Manta_v1.6
SVTYPE	Structural variant type (DEL, DUP, INV, BND, INS)	Manta	Manta_v1.6
ONCOKB_DATA_VERSION	Version of the OncoKB dataset used for annotation	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_EFFECT	Functional effect of the variant according to OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_GENE_EXIST	Indicates whether the queried gene exists in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_GENE_SUMMARY	Brief overview of the gene and its role in cancer. Only when parameter -d is specified	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_HOTSPOT	Indicates whether the variant is considered a hotspot by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_LAST_UPDATE	Date of the most recent update to the OncoKB record	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_ONCOGENIC	Oncogenic classification assigned by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_QUERY_TYPE	Query type used for the OncoKB annotation request	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TUMOR_TYPE_SUMMARY	Tumor type summary describes the therapeutic implication that applies to the indication. Only when parameter -d is specified	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_VARIANT_EXIST	Indicates whether the queried variant exists in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_VARIANT_SUMMARY	Variant summary describes the variant oncogenicity, last review if it is VUS. Only when parameter -d is specified	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_treatments	Treatment implications and associated therapies from OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TREATMENTS	Treatment implications and associated therapies from OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_JSON	Raw JSON response returned by OncoKB for the queried variant	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.id	Internal identifier used in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.referenceGenome	Reference genome used in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.hugoSymbol	HGNC gene symbol submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.entrezGeneId	Entrez gene identifier submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.alteration	Alteration string submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.alterationType	Alteration type submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.svType	Structural variant type submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.tumorType	Tumour type submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.consequence	Functional consequence submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.proteinStart	Protein start position submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.proteinEnd	Protein end position submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.hgvs	HGVS expression submitted in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.hgvsInfo	Parsed HGVS information used in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_query.canonicalTranscript	Canonical transcript used in the OncoKB query	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_mutationEffect.knownEffect	Known mutation effect classification reported by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_mutationEffect.description	Description of the mutation effect reported by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_mutationEffect.citations.pmids	PubMed identifiers supporting the mutation effect in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_mutationEffect.citations.abstracts	Abstract-based citations supporting the mutation effect in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ANNOTATED	Whether the variant is annotated by OncoKB successfully. TRUE, FALSE	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
GENE_IN_ONCOKB	Whether the gene has been curated by the OncoKB Team. TRUE, FALSE	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
VARIANT_IN_ONCOKB	Whether the variant has been curated by the OncoKB Team. Note when a variant does not exist, it may still have annotations. True, False	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
MUTATION_EFFECT	The biological effect of a mutation/alteration on the protein function that gives rise to changes in the biological properties of cells expressing the mutant/altered protein compared to cells expressing the wildtype protein. Gain-of-function, Likely Gain-of-function, Loss-of-function, Likely Loss-of-function, Switch-of-function, Likely Switch-of-function, Neutral, Likely Neutral, Inconclusive, Unknown	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
MUTATION_EFFECT_CITATIONS	All citations related to the biological effect. PMID, Abstract, Website link	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOGENIC	In OncoKB, “oncogenic” is defined as “referring to the ability to induce or cause cancer” as described in the second edition of The Biology of Cancer by Robert Weinberg (2014). Oncogenic, Likely Oncogenic, Likely Neutral, Inconclusive, Unknown, Resistance	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_1	The leveled therapeutic implications.	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_2	Presence of Level 2 therapeutic evidence in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_3A	Presence of Level 3A therapeutic evidence in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_3B	Presence of Level 3B therapeutic evidence in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_4	Presence of Level 4 therapeutic evidence in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_R1	Presence of Level R1 resistance evidence in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_R2	Presence of Level R2 resistance evidence in OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
HIGHEST_LEVEL	The highest level of evidence for therapeutic implications. Order LEVEL_R1 > LEVEL_1 > LEVEL_2 > LEVEL_3A > LEVEL_3B > LEVEL_4 > LEVEL_R2	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
HIGHEST_SENSITIVE_LEVEL	The highest sensitive level of evidence for therapeutic implications. Order LEVEL_1 > LEVEL_2 > LEVEL_3A > LEVEL_3B > LEVEL_4	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
HIGHEST_RESISTANCE_LEVEL	The highest resistance level of evidence for therapeutic implications. Order LEVEL_R1 > LEVEL_R2	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
TX_CITATIONS	All citations related to therapeutic implications. PMID, Abstract, Website link	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_Dx1	The leveled diagnostic implications. Tumor type the level of evidence is assigned to	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_Dx2	The leveled diagnostic implications. Tumor type the level of evidence is assigned to	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_Dx3	The leveled diagnostic implications. Tumor type the level of evidence is assigned to	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
HIGHEST_DX_LEVEL	The highest level of evidence for diagnostic implications. LEVEL_Dx1, LEVEL_Dx2, LEVEL_Dx3	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
DX_CITATIONS	All citations related to diagnostic implications. PMID, Abstract, Website link	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_Px1	The leveled prognostic implications. Tumor type the level of evidence is assigned to	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_Px2	The leveled prognostic implications. Tumor type the level of evidence is assigned to	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
LEVEL_Px3	The leveled prognostic implications. Tumor type the level of evidence is assigned to	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
HIGHEST_PX_LEVEL	The highest level of evidence for prognostic implications. LEVEL_Px1, LEVEL_Px2, LEVEL_Px3	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
PX_CITATIONS	All citations related to prognostic implications. PMID, Abstract, Website link	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
FORMAT	FORMAT column describing the genotype fields available for each sample	VCF	VCF_v4.2
FORMAT_DATA	Raw sample-level data extracted from the FORMAT column	VCF	VCF_v4.2
AD	Allelic depths for reference and alternate alleles	VCF	VCF_v4.2
F1R2	Count of reads supporting the allele in the F1R2 orientation	VCF	VCF_v4.2
F2R1	Count of reads supporting the allele in the F2R1 orientation	VCF	VCF_v4.2
GT	Genotype call for the sample	VCF	VCF_v4.2
MB	Strand bias metric used by the variant caller	VCF	VCF_v4.2
OBC	Orientation Bias Filter base context	VCF	VCF_v4.2
OBPa	Observed base probabilities for alternate alleles	VCF	VCF_v4.2
OBParc	Observed base probabilities for reference and complement alleles	VCF	VCF_v4.2
OBPsnp	Observed base probabilities for SNP detection	VCF	VCF_v4.2
PR	Paired-read support for structural variant breakpoints	VCF	VCF_v4.2
PS	Phase set identifier used to group phased variants	VCF	VCF_v4.2
SB	Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias	VCF	VCF_v4.2
SQ	Structural variant quality score	VCF	VCF_v4.2
SR	Split-read support for structural variant breakpoints	VCF	VCF_v4.2
ONCOKB_DIAG_LVL	Highest diagnostic implication level reported by OncoKB for the queried variant	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_EFFECT_DESC	Description of the mutation effect reported by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_FDA_LVL	Highest FDA-recognised level of evidence for the variant reported by OncoKB	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PMIDS	PubMed identifiers supporting the OncoKB annotation for the queried variant	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_SENS_LVL	Highest therapeutic sensitivity level reported by OncoKB for the queried variant	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_levelOfEvidence (wildcard)	OncoKB diagnostic implication level of evidence	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_alterations (wildcard)	OncoKB diagnostic implication associated alterations	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_pmids (wildcard)	OncoKB diagnostic implication supporting PubMed IDs	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_abstracts (wildcard)	OncoKB diagnostic implication supporting abstracts	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_description (wildcard)	OncoKB diagnostic implication evidence description	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.id (wildcard)	OncoKB diagnostic implication tumor type ID	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.code (wildcard)	OncoKB diagnostic implication tumor type code	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.color (wildcard)	OncoKB diagnostic implication tumor type color	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.name (wildcard)	OncoKB diagnostic implication tumor type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.mainType.id (wildcard)	OncoKB diagnostic implication main tumor type ID	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.mainType.name (wildcard)	OncoKB diagnostic implication main tumor type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.mainType.tumorForm (wildcard)	OncoKB diagnostic implication main tumor type form	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.tissue (wildcard)	OncoKB diagnostic implication tumor tissue	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.parent (wildcard)	OncoKB diagnostic implication tumor type parent	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.level (wildcard)	OncoKB diagnostic implication tumor type level	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_DIAG_*_tumorType.tumorForm (wildcard)	OncoKB diagnostic implication tumor form	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_level (wildcard)	OncoKB treatment implication level of evidence	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_fdaLevel (wildcard)	OncoKB treatment implication FDA level	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_drugs (wildcard)	OncoKB treatment drugs (combined as Drug1 + Drug2)	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_alterations (wildcard)	OncoKB treatment implication associated alterations	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_approvedIndications (wildcard)	OncoKB treatment approved indications	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_pmids (wildcard)	OncoKB treatment implication supporting PubMed IDs	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_abstracts (wildcard)	OncoKB treatment implication supporting abstracts	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_description (wildcard)	OncoKB treatment implication evidence description	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.id (wildcard)	OncoKB treatment associated cancer type ID	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.code (wildcard)	OncoKB treatment associated cancer type code	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.name (wildcard)	OncoKB treatment associated cancer type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.mainType.name (wildcard)	OncoKB treatment associated main cancer type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.mainType.tumorForm (wildcard)	OncoKB treatment associated main cancer tumor form	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.tissue (wildcard)	OncoKB treatment associated cancer tissue	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelExcludedCancerTypes (wildcard)	OncoKB treatment excluded cancer types	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.mainType.name (wildcard)	OncoKB treatment associated main cancer type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.color (wildcard)	OncoKB treatment associated cancer type color	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.level (wildcard)	OncoKB treatment associated cancer type hierarchy level	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.mainType.id (wildcard)	OncoKB treatment associated main cancer type ID	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.parent (wildcard)	OncoKB treatment associated cancer type parent node	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_TX_*_levelAssociatedCancerType.tumorForm (wildcard)	OncoKB treatment associated cancer tumor form	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_levelOfEvidence (wildcard)	OncoKB prognostic implication level of evidence	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_alterations (wildcard)	OncoKB prognostic implication associated alterations	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_pmids (wildcard)	OncoKB prognostic implication supporting PMIDs	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_abstracts (wildcard)	OncoKB prognostic implication supporting abstracts	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_description (wildcard)	OncoKB prognostic implication description	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_tumorType.id (wildcard)	OncoKB prognostic implication tumor type ID	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_tumorType.code (wildcard)	OncoKB prognostic implication tumor type code	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_tumorType.name (wildcard)	OncoKB prognostic implication tumor type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_tumorType.mainType.name (wildcard)	OncoKB prognostic implication main tumor type name	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant
ONCOKB_PROG_*_tumorType.tissue (wildcard)	OncoKB prognostic implication tumor tissue	OncoKB	Refer to the ONCOKB_DATA_VERSION column and datetime of the last update of the variant